- Home
- Bioconductor 2.14
- Software Packages
- metaArray
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("metaArray")
In most cases, you don't need to download the package archive at all.
metaArray
Integration of Microarray Data for Meta-analysis
Bioconductor version: 2.14
1) Data transformation for meta-analysis of microarray Data: Transformation of gene expression data to signed probability scale (MCMC/EM methods) 2) Combined differential expression on raw scale: Weighted Z-score after stabilizing mean-variance relation within platform
Author: Debashis Ghosh <ghoshd at psu.edu> Hyungwon Choi <hyung_won_choi at nuhs.edu.sg>
Maintainer: Hyungwon Choi <hyung_won_choi at nuhs.edu.sg>
Citation (from within R,
enter citation("metaArray")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("metaArray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metaArray")
| R Script | metaArray Vignette | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, Microarray, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) |
| License | LGPL-2 |
| Depends | |
| Imports | Biobase, MergeMaid, graphics, stats |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | oneChannelGUI |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | metaArray_1.42.0.tar.gz |
| Windows Binary | metaArray_1.42.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | metaArray_1.42.0.tgz |
| Mac OS X 10.9 (Mavericks) | metaArray_1.42.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2014
