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marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.14

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Citation (from within R, enter citation("marray")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("marray")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		Reference Manual
Text		LICENSE

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.42.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	LGPL
Depends	R (>= 2.10.0), limma, methods
Imports
Suggests	tkWidgets
System Requirements
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, MineICA, nnNorm, OLIN, stepNorm, TurboNorm
Imports Me	arrayQuality, ChAMP, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse
Suggests Me	AgiMicroRna, DEGraph, Mfuzz

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