To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.14

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

PDF	R Script	An introduction to clusterProfiler
PDF		Reference Manual
Text		NEWS

biocViews	Clustering, GO, GeneSetEnrichment, MultipleComparison, Pathways, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), ggplot2
Imports	methods, stats4, plyr, AnnotationDbi, GO.db, KEGG.db, DOSE, GOSemSim
Suggests	org.Hs.eg.db, ReactomePA, pathview, knitr
System Requirements
URL	http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
Depends On Me
Imports Me
Suggests Me	ChIPseeker, DOSE, GOSemSim, ReactomePA

Follow Installation instructions to use this package in your R session.

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!