To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chipseq")

In most cases, you don't need to download the package archive at all.

chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.14

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("chipseq")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chipseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseq")

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

biocViews	ChIPSeq, Software
Version	1.14.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports	methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests	GenomicFeatures, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
URL
Depends On Me	PING
Imports Me	ChIPQC, HTSeqGenie
Suggests Me	ggbio, oneChannelGUI

Follow Installation instructions to use this package in your R session.

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