To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affypdnn")

In most cases, you don't need to download the package archive at all.

affypdnn

Probe Dependent Nearest Neighbours (PDNN) for the affy package

Bioconductor version: 2.14

The package contains functions to perform the PDNN method described by Li Zhang et al.

Author: H. Bjorn Nielsen and Laurent Gautier (Many thanks to Li Zhang early communications about the existence of the PDNN program and related publications).

Maintainer: Laurent Gautier<lgautier at gmail.com>

Citation (from within R, enter citation("affypdnn")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affypdnn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("affypdnn")

 

PDF R Script affypdnn
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, Preprocessing, Software
Version 1.38.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.13.0), affy(>= 1.5)
Imports
Suggests affydata, hgu95av2probe
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source affypdnn_1.38.0.tar.gz
Windows Binary affypdnn_1.38.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) affypdnn_1.38.0.tgz
Mac OS X 10.9 (Mavericks) affypdnn_1.38.0.tgz
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