To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RMAPPER")

In most cases, you don't need to download the package archive at all.

RMAPPER

R interface to the MAPPER database of transcription factor binding sites

Bioconductor version: 2.14

The RMAPPER package allows you to retrieve a set of predicted transcription factor binding sites from the MAPPER database (http://genome.ufl.edu/mapper/) through a simple HTTP request.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: Heike Sichtig <hsichtig at ufl.edu>, Alberto Riva <ariva at ufl.edu>

Citation (from within R, enter citation("RMAPPER")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RMAPPER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RMAPPER")

 

PDF R Script Interface to MAPPER TFBS database
PDF   Reference Manual

Details

biocViews Annotation, Genetics, Software
Version 1.14.0
In Bioconductor since BioC 1.8 (R-2.3)
License Artistic 2.0
Depends methods
Imports
Suggests RCurl
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RMAPPER_1.14.0.tar.gz
Windows Binary RMAPPER_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) RMAPPER_1.14.0.tgz
Mac OS X 10.9 (Mavericks) RMAPPER_1.14.0.tgz
Browse/checkout source (username/password: readonly)
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