To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

In most cases, you don't need to download the package archive at all.

QDNAseq

Quantitative DNA sequencing for chromosomal aberrations

Bioconductor version: 2.14

Quantitative DNA sequencing for chromosomal aberrations.

Author: Ilari Scheinin

Maintainer: Ilari Scheinin <ilari.scheinin at gmail.com>

Citation (from within R, enter citation("QDNAseq")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("QDNAseq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QDNAseq")

biocViews	CopyNumberVariation, DNASeq, Genetics, GenomeAnnotation, Preprocessing, QualityControl, Sequencing, Software
Version	1.0.5
In Bioconductor since	BioC 2.14 (R-3.1)
License	GPL
Depends	R (>= 2.15.0)
Imports	graphics, methods, stats, utils, matrixStats (>= 0.9.4), R.utils (>= 1.28.4), Biobase(>= 2.18.0), CGHbase(>= 1.18.0), CGHcall(>= 2.18.0), DNAcopy(>= 1.32.0), Rsamtools(>= 1.10.0)
Suggests	R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb, GenomicRanges
System Requirements
URL	https://github.com/ccagc/QDNAseq
Depends On Me
Imports Me
Suggests Me

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