To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("EDDA")
In most cases, you don't need to download the package archive at all.
EDDA
Experimental Design in Differential Abundance analysis
Bioconductor version: 2.14
EDDA can aid in the design of a range of common experiments such as RNA-seq, Nanostring assays, RIP-seq and Metagenomic sequencing, and enables researchers to comprehensively investigate the impact of experimental decisions on the ability to detect differential abundance.
Author: Li Juntao, Luo Huaien, Chia Kuan Hui Burton, Niranjan Nagarajan
Maintainer: Chia Kuan Hui Burton <chiakhb at gis.a-star.edu.sg>, Niranjan Nagarajan <nagarajann at gis.a-star.edu.sg>
Citation (from within R,
enter citation("EDDA")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("EDDA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EDDA")
| R Script | EDDA Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPSeq, ExperimentalDesign, Normalization, RNASeq, Sequencing, Software |
| Version | 1.0.2.1 |
| In Bioconductor since | BioC 2.14 (R-3.1) |
| License | GPL (>= 2) |
| Depends | Rcpp (>= 0.10.4), parallel, methods, ROCR, DESeq, baySeq, snow, edgeR |
| Imports | graphics, stats, utils, parallel, methods, ROCR, DESeq, baySeq, snow, edgeR |
| Suggests | |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | EDDA_1.0.2.1.tar.gz |
| Windows Binary | EDDA_1.0.2.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | EDDA_1.0.2.1.tgz |
| Mac OS X 10.9 (Mavericks) | EDDA_1.0.2.1.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!
Contact us: support.bioconductor.org
Hosting provided by Fred Hutchinson Cancer Research Center
Copyright © 2003 - 2014
