To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

In most cases, you don't need to download the package archive at all.

CopyNumber450k

R package for calling CNV from Illumina 450k methylation microarrays

Bioconductor version: 2.14

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay

Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>

Citation (from within R, enter citation("CopyNumber450k")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyNumber450k")

PDF	R Script	CopyNumber450k User's Guide
PDF		Reference Manual

biocViews	CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software
Version	1.0.0
In Bioconductor since	BioC 2.14 (R-3.1)
License	Artistic-2.0
Depends	Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Imports	methods
Suggests	CopyNumber450kData, minfiData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

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