Parallel queries distributed by file or by range


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Documentation for package ‘GenomicFiles’ version 1.0.1

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BamFileViews Views into a set of BAM files
BamFileViews-class Views into a set of BAM files
BamFileViews-method Views into a set of BAM files
BigWigFileViews Views into a set of BigWig files
BigWigFileViews-class Views into a set of BigWig files
BigWigFileViews-method Views into a set of BigWig files
class:GenomicFileViews Views into a set of files
countBam-method Views into a set of BAM files
coverage-method Views into a set of BigWig files
dim-method Views into a set of files
dimnames-method Views into a set of files
dimnames<--method Views into a set of files
FaFileViews Views into a set of Fasta files
FaFileViews-class Views into a set of Fasta files
FaFileViews-method Views into a set of Fasta files
fileExperiment Views into a set of files
fileExperiment<- Views into a set of files
fileList Views into a set of files
fileList<- Views into a set of files
fileRange Views into a set of files
fileRange<- Views into a set of files
fileSample Views into a set of files
fileSample<- Views into a set of files
findTypeRegistry Functions for creating and searching a registry of file types.
GenomicFileViews Views into a set of files
GenomicFileViews-class Views into a set of files
makeFileType Functions for creating and searching a registry of file types.
names-method Views into a set of files
names<--method Views into a set of files
reduceBy Distribute parallel computations across files
reduceByFile Distribute parallel computations across files
reduceByFile-method Distribute parallel computations across files
reduceByRange Distribute parallel computations across files
reduceByRange-method Distribute parallel computations across files
registerFileType Functions for creating and searching a registry of file types.
registry-utils Functions for creating and searching a registry of file types.
scanBam-method Views into a set of BAM files
show-method Views into a set of files
summarizeOverlaps-method Views into a set of BAM files
summary-method Views into a set of BigWig files
yieldSize-method Views into a set of files
yieldSize<--method Views into a set of files
[-method Views into a set of files