annotate |
Annotates the gene IDs of a given cellHTS object |
annotate.cellHTS |
Annotates the gene IDs of a given cellHTS object |
bdgpbiomart |
Dataset with annotation of CG identifiers |
Bscore |
B score normalization |
configure |
Configures the plates and plate result files |
configure.cellHTS |
Configures the plates and plate result files |
getEnVisionCrosstalkCorrectedData |
Read a plate file obtain from EnVision Plate Reader |
getEnVisionRawData |
Read a plate file obtain from EnVision Plate Reader |
getLibraryPlate |
384-well plate assay format to a 96-well plate library format |
getMatrix |
Create a matrix with replicate data in columns |
imageScreen |
Experiment-wide quality control plot of a cellHTS object |
KcViab |
A sample cellHTS object - D. melanogaster genome-wide RNAi screen |
KcViabSmall |
A sample cellHTS object - D. melanogaster genome-wide RNAi screen |
lines.ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
normalizeChannels |
Normalization of dual-channel data and data transformation |
normalizePlates |
Plate-wise data normalization, and data transformation |
oneRowPerId |
Rearrange dataframe entries such that there is exactly one row per ID. |
plate effects |
Plate-wise data normalization, and data transformation |
plot.ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
plotPlateLibrary |
Plate plot of the raw data of the four consecutive 96-well plates of a given 384-well plate |
plotSpatialEffects |
Plate plot with the row and column offsets estimated by the B score method |
print.cellHTS |
Printing cellHTS objects |
readPlateData |
Read a collection of plate reader data files |
ROC |
Creates an object of class "ROC" which can be plotted as a ROC curve |
screenMatch |
Matching the gene annotation of two screens |
summarizeChannels |
Normalization and transformation of dual-channel data |
summarizeReplicates |
Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe |
write.tabdel |
Wrapper to function 'write.table' used to write data to a tab-delimited file |
writeReport |
Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object |
writeTab |
Write the data from a cellHTS object to a tab-delimited file |
writeTab.cellHTS |
Write the data from a cellHTS object to a tab-delimited file |