SomaticSignatures-package | SomaticSignatures package |
dfConvertColumns | Utility functions |
extractSignatures | Estimate Somatic Signatures |
findSignatures | Estimate Somatic Signatures |
gcContent | GC Content |
grangesPlain | GRanges converter functions |
hs-chrs | Human Chromosome Names |
hsAllosomes | Human Chromosome Names |
hsAutosomes | Human Chromosome Names |
hsLinear | Human Chromosome Names |
hsToplevel | Human Chromosome Names |
k3we | Kmer datasets |
k3wg | Kmer datasets |
kmeansSignatures | Estimate Somatic Signatures |
kmerFrequency | Kmer Frequency |
kmers | Kmer datasets |
kmers-data | Kmer datasets |
mutational-normalization | Normalize Somatic Motifs |
mutational-plots | Mutational Plots |
mutational-signatures | Estimate Somatic Signatures |
mutationContext | mutationContext functions |
mutationContextH5vc | mutationContext functions |
mutationContextMatrix | Estimate Somatic Signatures |
mutationContextMutect | mutationContext functions |
mutationDistance | Distributions of mutational locations. |
ncbi | GRanges converter functions |
nmfSignatures | Estimate Somatic Signatures |
normalizeMotifs | Normalize Somatic Motifs |
pcaSignatures | Estimate Somatic Signatures |
plotRainfall | Distributions of mutational locations. |
plotSampleMap | Estimate Somatic Signatures |
plotSamples | Estimate Somatic Signatures |
plotSamplesObserved | Estimate Somatic Signatures |
plotSignatureMap | Estimate Somatic Signatures |
plotSignatures | Estimate Somatic Signatures |
plotVariantAbundance | Mutational Plots |
readMutect | readMutect |
seqchar | GRanges converter functions |
SomaticSignatures | SomaticSignatures package |
ucsc | GRanges converter functions |
variants-utils | Utility functions |