source("http://bioconductor.org/biocLite.R")
biocLite("ind1KG")

ind1KG

Data from 1000 Genomes, NA19240 (female) chr6 excerpt

Bioconductor version: 2.13

Elements of samtools/bioc workflow for dealing with personal sequence focusing on identification and interpretation of rare variants

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ind1KG")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ind1KG")

 

PDF	R Script	ind1KG -- 1000 genomes data demo
PDF	R Script	Notes for eSet developers
PDF		Reference Manual

Details

biocViews	ExperimentData, Genetics, HighThroughputSequencing
Version	0.1.17
License	Artistic-2.0
Depends	R (>= 2.10.1), chopsticks
Imports
Suggests	Rsamtools, rtracklayer, GenomicFeatures, org.Hs.eg.db, SNPlocs.Hsapiens.dbSNP.20090506, TxDb.Hsapiens.UCSC.hg18.knownGene, lumiHumanIDMapping, GGBase, GGtools, hmyriB36
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ind1KG_0.1.17.tar.gz
Windows Binary	ind1KG_0.1.17.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ind1KG_0.1.17.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats