source("http://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

DeSousa2013

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Bioconductor version: 2.13

This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.

Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DeSousa2013")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DeSousa2013")

 

PDF	R Script	Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions
PDF		Reference Manual

Details

biocViews	Bioinformatics, ExperimentData
Version	0.99.3
License	Artistic-2.0
Depends	R (>= 2.15)
Imports	affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DeSousa2013_0.99.3.tar.gz
Windows Binary	DeSousa2013_0.99.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DeSousa2013_0.99.3.tgz
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