source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 2.13

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("yaqcaffy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yaqcaffy")

 

PDF	R Script	yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.22.0
In Bioconductor since	BioC 2.2 (R-2.7)
License	Artistic-2.0
Depends	simpleaffy(>= 2.19.3), methods
Imports	stats4
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	qcmetrics

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	yaqcaffy_1.22.0.tar.gz
Windows Binary	yaqcaffy_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	yaqcaffy_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats