source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

wateRmelon

Illumina 450 methylation array normalization and metrics

Bioconductor version: 2.13

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi, minfi and IMA packages.

Author: Leonard C Schalkwyk, Ruth Pidsley, Chloe CY Wong, with functions contributed by Nizar Touleimat, Matthieu Defrance, Andrew Teschendorff, Jovana Maksimovic

Maintainer: Leo <Leonard.Schalkwyk at kcl.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("wateRmelon")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("wateRmelon")

 

PDF	R Script	Package
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.2.2
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL-3
Depends	R (>= 2.10), limma, methods, matrixStats, methylumi, lumi, IlluminaHumanMethylation450k.db, ROC
Imports
Suggests	RPMM
System Requirements
URL
Depends On Me
Imports Me	ChAMP
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	wateRmelon_1.2.2.tar.gz
Windows Binary	wateRmelon_1.2.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	wateRmelon_1.2.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats