source("http://bioconductor.org/biocLite.R")
biocLite("spotSegmentation")

spotSegmentation

Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots

Bioconductor version: 2.13

Spot segmentation via model-based clustering and gridding for blocks within microarray slides, as described in Li et al, Robust Model-Based Segmentation of Microarray Images, Technical Report no. 473, Department of Statistics, University of Washington.

Author: Qunhua Li, Chris Fraley, Adrian Raftery Department of Statistics, University of Washington

Maintainer: Chris Fraley <fraley at stat.washington.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spotSegmentation")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spotSegmentation")

 

PDF		spotsegdoc.pdf
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, QualityControl, Software, TwoChannel
Version	1.36.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends	R (>= 2.10), mclust
Imports
Suggests
System Requirements
URL	http://www.stat.washington.edu/fraley
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	spotSegmentation_1.36.0.tar.gz
Windows Binary	spotSegmentation_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spotSegmentation_1.36.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats