source("http://bioconductor.org/biocLite.R")
biocLite("spliceR")

spliceR

Classification of alternative splicing and prediction of coding potential from RNA-seq data.

Bioconductor version: 2.13

An R package for classification of alternative splicing and prediction of coding potential from RNA-seq data.

Author: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

Maintainer: Johannes Waage <johannes.waage at gmail.com>, Kristoffer Vitting-Seerup <k.vitting.seerup at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spliceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spliceR")

 

PDF	R Script	spliceR Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, DifferentialExpression, HighThroughputSequencing, HighThroughputSequencingData, RNAseq, RNAseqData, Software, software, visualization
Version	1.3.1
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>=2)
Depends	R (>= 2.15.0), methods, cummeRbund, rtracklayer, VennDiagram, RColorBrewer, plyr
Imports	GenomicRanges, IRanges
Suggests	BSgenome.Hsapiens.UCSC.hg19, BSgenome
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	spliceR_1.3.1.tar.gz
Windows Binary	spliceR_1.3.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spliceR_1.3.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats