source("http://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

rnaSeqMap

rnaSeq secondary analyses

Bioconductor version: 2.13

The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time

Author: Anna Lesniewska <alesniewska at cs.put.poznan.pl>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("rnaSeqMap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rnaSeqMap")

 

PDF	R Script	rnaSeqMap primer
PDF		Reference Manual

Details

biocViews	Annotation, Bioinformatics, DifferentialExpression, GeneExpression, HighThroughputSequencing, RNAseq, ReportWriting, SAGE, Software, Transcription, Visualization
Version	2.18.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL-2
Depends	R (>= 2.11.0), methods, Biobase, Rsamtools
Imports	GenomicRanges, IRanges, edgeR, DESeq, DBI
Suggests
System Requirements
URL
Depends On Me	ampliQueso
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	rnaSeqMap_2.18.0.tar.gz
Windows Binary	rnaSeqMap_2.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	rnaSeqMap_2.18.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats