source("http://bioconductor.org/biocLite.R")
biocLite("mosaics")

mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: 2.13

This package provides functions for fitting MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung <chungdon at stat.wisc.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mosaics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mosaics")

 

PDF		Figure4a.pdf
PDF		Figure4b.pdf
PDF		Figure5a.pdf
PDF		Figure5b.pdf
PDF		Figure5c.pdf
PDF		Figure5d.pdf
PDF		GOF_matchLow.pdf
PDF		GOF_rMOM.pdf
PDF	R Script	MOSAiCS
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version	1.10.1
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL (>= 2)
Depends	R (>= 2.11.1), methods, graphics, Rcpp
Imports	MASS, splines, lattice, IRanges
Suggests	mosaicsExample
System Requirements	Perl
URL	http://groups.google.com/group/mosaics_user_group
Depends On Me	jmosaics
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	mosaics_1.10.1.tar.gz
Windows Binary	mosaics_1.10.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	mosaics_1.10.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats