source("http://bioconductor.org/biocLite.R")
biocLite("mgsa")

mgsa

Model-based gene set analysis

Bioconductor version: 2.13

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Author: Sebastian Bauer <mail at sebastianbauer.info>, Julien Gagneur <gagneur at genzentrum.lmu.de>

Maintainer: Sebastian Bauer <mail at sebastianbauer.info>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mgsa")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mgsa")

 

PDF	R Script	Overview of the mgsa package.
PDF		Reference Manual

Details

biocViews	GO, GeneSetEnrichment, Pathways, Software
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.14.0), methods, gplots
Imports	graphics, stats, utils
Suggests	DBI, RSQLite, GO.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	gCMAP

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	mgsa_1.10.0.tar.gz
Windows Binary	mgsa_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	mgsa_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats