source("http://bioconductor.org/biocLite.R")
biocLite("matchBox")

matchBox

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: 2.13

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("matchBox")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matchBox")

 

PDF	R Script	Working with the matchBox package
PDF		Reference Manual

Details

biocViews	Annotation, Microarray, MultipleComparisons, Software, Visualization
Version	1.4.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.8.0)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	matchBox_1.4.0.tar.gz
Windows Binary	matchBox_1.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	matchBox_1.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats