source("http://bioconductor.org/biocLite.R")
biocLite("manta")

manta

Microbial Assemblage Normalized Transcript Analysis

Bioconductor version: 2.13

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti, David M. Schruth

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("manta")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("manta")

 

PDF	R Script	manta
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Bioinformatics, DataImport, DifferentialExpression, GeneExpression, Genetics, HighThroughputSequencing, QualityControl, RNAseq, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	Artistic-2.0
Depends	R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports	Hmisc, caroline (>= 0.6.6)
Suggests	RSQLite, plotrix
System Requirements
URL	http://manta.ocean.washington.edu/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	manta_1.8.0.tar.gz
Windows Binary	manta_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	manta_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats