source("http://bioconductor.org/biocLite.R")
biocLite("imageHTS")

imageHTS

Analysis of high-throughput microscopy-based screens

Bioconductor version: 2.13

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Author: Gregoire Pau, Xian Zhang, Michael Boutros, Wolfgang Huber

Maintainer: Gregoire Pau <gregoire.pau at embl.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("imageHTS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("imageHTS")

 

PDF	R Script	Analysis of high-throughput microscopy-based screens with imageHTS
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CellBasedAssays, Preprocessing, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	LGPL-2.1
Depends	R (>= 2.9.0), EBImage(>= 4.3.12), cellHTS2(>= 2.10.0)
Imports	tools, Biobase, hwriter, methods, vsn, stats, utils, e1071
Suggests	BiocStyle, MASS
System Requirements
URL
Depends On Me	phenoDist
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	imageHTS_1.12.0.tar.gz
Windows Binary	imageHTS_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	imageHTS_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats