source("http://bioconductor.org/biocLite.R")
biocLite("iSeq")

iSeq

Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models

Bioconductor version: 2.13

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iSeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSeq")

 

PDF	R Script	iSeq
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, HighThroughputSequencing, Software
Version	1.14.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL (>= 2)
Depends	R (>= 2.10.0)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	iSeq_1.14.0.tar.gz
Windows Binary	iSeq_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	iSeq_1.14.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats