source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: 2.13

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

 

PDF	R Script	ensemblVEP
PDF		Reference Manual
Text		README

Details

biocViews	Annotation, Bioinformatics, Software
Version	1.2.2
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-2.0
Depends	methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports	Biostrings, IRanges
Suggests	RUnit, BiocGenerics
System Requirements	Ensembl VEP (API version 67, 73 or 74) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/variation/vep/index.html for installation instructions.
URL
Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ensemblVEP_1.2.2.tar.gz
Windows Binary	ensemblVEP_1.2.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ensemblVEP_1.2.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats