source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

dagLogo

dagLogo

Bioconductor version: 2.13

Visualize significant conserved amino acid sequence pattern in groups based on probability theory

Author: Jianhong Ou, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("dagLogo")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dagLogo")

 

PDF	R Script	dagLogo Vignette
PDF		Reference Manual

Details

biocViews	GenomicsSequence, SequenceMatching, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>=2)
Depends	R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack
Imports	XML, UniProt.ws, pheatmap, Biostrings
Suggests	RUnit, BiocGenerics, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	dagLogo_1.0.0.tar.gz
Windows Binary	dagLogo_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	dagLogo_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats