source("http://bioconductor.org/biocLite.R")
biocLite("customProDB")

customProDB

Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.

Bioconductor version: 2.13

Generate customized protein sequence database from RNA-Seq data for proteomics search

Author: xiaojing wang

Maintainer: xiaojing wang <xiaojing.wang at vanderbilt.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("customProDB")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("customProDB")

 

PDF	R Script	Introduction to customProDB
PDF		Reference Manual

Details

biocViews	Software
Version	1.2.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 3.0.1), IRanges, AnnotationDbi, biomaRt
Imports	Rsamtools(>= 1.10.2), Biostrings(>= 2.26.3), IRanges, GenomicRanges(>= 1.13.18), GenomicFeatures(>= 1.13.15), biomaRt(>= 2.17.1), stringr, RCurl, plyr, VariantAnnotation(>= 1.7.28), rtracklayer, RSQLite, AnnotationDbi
Suggests	BSgenome.Hsapiens.UCSC.hg19
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	customProDB_1.2.0.tar.gz
Windows Binary	customProDB_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	customProDB_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats