source("http://bioconductor.org/biocLite.R")
biocLite("cqn")

cqn

Conditional quantile normalization

Bioconductor version: 2.13

A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.

Author: Jean (Zhijin) Wu, Kasper Daniel Hansen

Maintainer: Kasper Daniel Hansen <khansen at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("cqn")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cqn")

 

PDF	R Script	CQN (Conditional Quantile Normalization)
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Preprocessing, RNAseq, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg
Imports	splines
Suggests	scales, edgeR
System Requirements
URL
Depends On Me
Imports Me	tweeDEseq
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	cqn_1.8.0.tar.gz
Windows Binary	cqn_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cqn_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats