source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

clstutils

Tools for performing taxonomic assignment.

Bioconductor version: 2.13

Tools for performing taxonomic assignment based on phylogeny using pplacer and clst.

Author: Noah Hoffman

Maintainer: Noah Hoffman <ngh2 at uw.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("clstutils")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clstutils")

 

PDF	R Script	clst
PDF	R Script	clstutils
PDF		Reference Manual

Details

biocViews	Classification, HighThroughputSequencing, QualityControl, Software, Visualization
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends	R (>= 2.10), clst, rjson, ape
Imports	lattice, RSQLite
Suggests	RUnit, RSVGTipsDevice
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	clstutils_1.10.0.tar.gz
Windows Binary	clstutils_1.10.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	clstutils_1.10.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats