source("http://bioconductor.org/biocLite.R")
biocLite("chipseq")

chipseq

chipseq: A package for analyzing chipseq data

Bioconductor version: 2.13

Tools for helping process short read data for chipseq experiments

Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("chipseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chipseq")

 

PDF	R Script	A Sample ChIP-Seq analysis workflow
PDF		Reference Manual

Details

biocViews	ChIPseq, Software
Version	1.12.0
In Bioconductor since	BioC 2.5 (R-2.10)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead
Imports	methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats
Suggests	GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene
System Requirements
URL
Depends On Me	PING
Imports Me	HTSeqGenie
Suggests Me	ggbio, oneChannelGUI

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	chipseq_1.12.0.tar.gz
Windows Binary	chipseq_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	chipseq_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats