source("http://bioconductor.org/biocLite.R")
biocLite("biovizBase")

biovizBase

Basic graphic utilities for visualization of genomic data.

Bioconductor version: 2.13

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("biovizBase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biovizBase")

 

PDF	R Script	An Introduction to biovizBase
PDF		intro-shrink-single.pdf
PDF		intro-shrinkageFun.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Preprocessing, Software, Visualization
Version	1.10.8
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.10), methods
Imports	methods, grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, IRanges, GenomicRanges(>= 1.13.3), Biostrings, Rsamtools(>= 1.13.1), GenomicFeatures
Suggests	BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
System Requirements
URL
Depends On Me	qrqc
Imports Me	ggbio, Gviz, qrqc
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	biovizBase_1.10.8.tar.gz
Windows Binary	biovizBase_1.10.8.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	biovizBase_1.10.8.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats