source("http://bioconductor.org/biocLite.R")
biocLite("affyPara")

affyPara

Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

Bioconductor version: 2.13

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>

Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("affyPara")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyPara")

 

PDF	R Script	Parallelized affy functions for preprocessing
PDF	R Script	Simulation Study for VSN Add-On Normalization and Subsample Size
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	Microarray, Preprocessing, Software
Version	1.22.0
In Bioconductor since	BioC 2.2 (R-2.7)
License	GPL-3
Depends	R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio
Imports
Suggests	affydata
System Requirements
URL	http://www.ibe.med.uni-muenchen.de
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	affyPara_1.22.0.tar.gz
Windows Binary	affyPara_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	affyPara_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats