source("http://bioconductor.org/biocLite.R")
biocLite("VanillaICE")

VanillaICE

A Hidden Markov Model for high throughput genotyping arrays

Bioconductor version: 2.13

Hidden Markov Models for characterizing chromosomal alterations in high throughput SNP arrays

Author: Robert Scharpf <rscharpf at jhsph.edu>, Kevin Scharpf, and Ingo Ruczinski <ingo at jhsph.edu>

Maintainer: Robert Scharpf <rscharpf at jhsph.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("VanillaICE")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VanillaICE")

 

PDF	R Script	crlmmDownstream
PDF	R Script	VanillaICE Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, CopyNumberVariants, GeneticVariability, SNP, Software, Visualization
Version	1.24.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	LGPL-2
Depends	R (>= 2.14.0)
Imports	stats, utils, methods, Biobase, oligoClasses(>= 1.21.12), lattice, IRanges(>= 1.13.22), grid, msm, iterators, foreach, GenomicRanges, matrixStats
Suggests	genomewidesnp6Crlmm(>= 1.0.7), hapmapsnp6, RColorBrewer, genefilter, RSQLite, foreach, RUnit, pd.mapping50k.hind240, SNPchip(>= 2.5.7), doSNOW
System Requirements
URL
Depends On Me
Imports Me	MinimumDistance
Suggests Me	oligoClasses

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	VanillaICE_1.24.0.tar.gz
Windows Binary	VanillaICE_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	VanillaICE_1.24.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats