source("http://bioconductor.org/biocLite.R")
biocLite("TransView")

TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets.

Bioconductor version: 2.13

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TransView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")

 

PDF	R Script	An introduction to TransView
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, Clustering, DNAMethylation, DataImport, GeneExpression, HighThroughputSequencing, Methylseq, Microarray, MultipleComparisons, RNAseq, Sequencing, Software, Transcription, Visualization
Version	1.6.1
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL-3
Depends	methods, GenomicRanges
Imports	Rsamtools, zlibbioc, gplots, IRanges
Suggests	RUnit, pasillaBamSubset
System Requirements
URL	http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	TransView_1.6.1.tar.gz
Windows Binary	TransView_1.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TransView_1.6.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats