source("http://bioconductor.org/biocLite.R")
biocLite("TSSi")

TSSi

Transcription Start Site Identification

Bioconductor version: 2.13

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Clemens Kreutz, Julian Gehring

Maintainer: Julian Gehring <julian.gehring at embl.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("TSSi")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSSi")

 

PDF	R Script	Introduction to the TSSi package: Identification of Transcription Start Sites
PDF		Reference Manual

Details

biocViews	Genetics, HighThroughputSequencing, Preprocessing, RNAseq, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	R (>= 2.13.2), BiocGenerics(>= 0.3.2)
Imports	BiocGenerics, methods, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
Suggests	rtracklayer
System Requirements
URL	http://julian-gehring.github.com/TSSi/
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	TSSi_1.8.0.tar.gz
Windows Binary	TSSi_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	TSSi_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats