source("http://bioconductor.org/biocLite.R")
biocLite("SANTA")

SANTA

Spatial Analysis of Network Associations

Bioconductor version: 2.13

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network. Vertices can also be individually ranked by their strength of association with high-weight vertices.

Author: Alex Cornish and Florian Markowetz

Maintainer: Alex Cornish <a.cornish12 at imperial.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SANTA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

 

PDF	R Script	Using SANTA
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, NetworkAnalysis, NetworkEnrichment, Software
Version	1.2.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-2.0
Depends	R (>= 2.14), igraph
Imports	msm, snow
Suggests	RUnit, BiocGenerics, org.Sc.sgd.db
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SANTA_1.2.0.tar.gz
Windows Binary	SANTA_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SANTA_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats