source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

RSVSim

RSVSim: an R/Bioconductor package for the simulation of structural variations

Bioconductor version: 2.13

RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at uni-muenster.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RSVSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RSVSim")

 

PDF	R Script	RSVSim: an R/Bioconductor package for the simulation of structural variations
PDF		Reference Manual

Details

biocViews	Bioinformatics, HighThroughputSequencing, HighThroughputSequencingData, Software
Version	1.2.1
In Bioconductor since	BioC 2.12 (R-3.0)
License	LGPL-3
Depends	R (>= 3.0.0), Biostrings, GenomicRanges
Imports	methods, IRanges, ShortRead
Suggests	BSgenome.Hsapiens.UCSC.hg19, MASS, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RSVSim_1.2.1.tar.gz
Windows Binary	RSVSim_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RSVSim_1.2.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats