source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

RDRToolbox

A package for nonlinear dimension reduction with Isomap and LLE.

Bioconductor version: 2.13

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <christoph.bartenhagen at ukmuenster.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RDRToolbox")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

 

PDF	R Script	A package for nonlinear dimension reduction with Isomap and LLE.
PDF		plot3D.pdf
PDF		RDRToolbox-003.pdf
PDF		SwissRoll.pdf
PDF		Reference Manual

Details

biocViews	ClusterValidation, Dimension, DimensionReduction, FeatureExtraction, Microarray, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL (>= 2)
Depends	R (>= 2.9.0), rgl
Imports	graphics, grDevices, methods, stats, MASS, rgl
Suggests	golubEsets
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RDRToolbox_1.12.0.tar.gz
Windows Binary	RDRToolbox_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RDRToolbox_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats