source("http://bioconductor.org/biocLite.R")
biocLite("PANR")

PANR

Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: 2.13

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <Xin.Wang at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PANR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PANR")

 

PDF		fullPAN.pdf
PDF	R Script	Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF		pvmodule.pdf
PDF		sigmod.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, Clustering, GraphsAndNetworks, NetworkInference, NetworkVisualization, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.14), igraph
Imports	graphics, grDevices, MASS, methods, pvclust, stats, utils
Suggests	snow, RedeR
System Requirements
URL
Depends On Me
Imports Me	Mulder2012
Suggests Me	RedeR

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	PANR_1.8.0.tar.gz
Windows Binary	PANR_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	PANR_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats