source("http://bioconductor.org/biocLite.R")
biocLite("NuPoP")

NuPoP

An R package for nucleosome positioning prediction

Bioconductor version: 2.13

NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.

Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>

Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NuPoP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NuPoP")

 

PDF	R Script	An R package for Nucleosome positioning prediction
PDF		NuPoP-manual.pdf
PDF		Reference Manual

Details

biocViews	Classification, Genetics, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL-2
Depends	R (>= 2.10)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	NuPoP_1.12.0.tar.gz
Windows Binary	NuPoP_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	NuPoP_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats