source("http://bioconductor.org/biocLite.R")
biocLite("MotIV")

MotIV

Motif Identification and Validation

Bioconductor version: 2.13

This package makes use of STAMP for comparing a set of motifs to a given database (e.g. JASPAR). It can also be used to visualize motifs, motif distributions, modules and filter motifs.

Author: Eloi Mercier, Raphael Gottardo

Maintainer: Eloi Mercier <emercier at chibi.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MotIV")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MotIV")

 

PDF	R Script	The MotIV users guide
PDF		Reference Manual

Details

biocViews	ChIPchip, ChIPseq, GenomicSequence, Microarray, MotifAnnotation, Software
Version	1.18.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL-2
Depends	R (>= 2.10), BiocGenerics(>= 0.1.0)
Imports	graphics, grid, methods, BiocGenerics, IRanges(>= 1.13.5), Biostrings(>= 1.24.0), lattice, rGADEM, stats, utils
Suggests	rtracklayer
System Requirements
URL
Depends On Me	motifStack
Imports Me
Suggests Me	MotifDb

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MotIV_1.18.0.tar.gz
Windows Binary	MotIV_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MotIV_1.18.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats