source("http://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

MethylSeekR

Segmentation of Bis-seq data

Bioconductor version: 2.13

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at fmi.ch>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MethylSeekR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MethylSeekR")

 

PDF	R Script	MethylSeekR
PDF		Reference Manual

Details

biocViews	DNAMethylation, HighThroughputSequencing, Methylseq, Software
Version	1.2.2
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL (>=2)
Depends	rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports	IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests	BSgenome.Hsapiens.UCSC.hg18
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MethylSeekR_1.2.2.tar.gz
Windows Binary	MethylSeekR_1.2.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MethylSeekR_1.2.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats