source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")

GOSim

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: 2.13

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOSim")

 

PDF		GOClusterExample.pdf
PDF		GOClustersil.pdf
PDF		GOExample.pdf
PDF		GOPCAExample.pdf
PDF	R Script	GOsim
PDF		Reference Manual

Details

biocViews	Clustering, GO, NetworkAnalysis, Software
Version	1.4.2
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>= 2)
Depends	GO.db, annotate, igraph
Imports	org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp, utils
Suggests
System Requirements
URL
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOSim_1.4.2.tar.gz
Windows Binary	GOSim_1.4.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GOSim_1.4.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats