source("http://bioconductor.org/biocLite.R")
biocLite("ExiMiR")

ExiMiR

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: 2.13

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ExiMiR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExiMiR")

 

PDF	R Script	Description of ExiMiR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DualChannel, GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription
Version	2.4.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-2
Depends	R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma
Imports	affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0)
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	ExiMiR_2.4.0.tar.gz
Windows Binary	ExiMiR_2.4.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ExiMiR_2.4.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats