source("http://bioconductor.org/biocLite.R")
biocLite("DBChIP")

DBChIP

Differential Binding of Transcription Factor with ChIP-seq

Bioconductor version: 2.13

DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.

Author: Kun Liang

Maintainer: Kun Liang <kliang at stat.wisc.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DBChIP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DBChIP")

 

PDF	R Script	DBChIP
PDF		Reference Manual

Details

biocViews	Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version	1.6.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL (>= 2)
Depends	R (>= 2.15.0), edgeR, DESeq
Imports
Suggests	ShortRead, BiocGenerics
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DBChIP_1.6.0.tar.gz
Windows Binary	DBChIP_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DBChIP_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats