source("http://bioconductor.org/biocLite.R")
biocLite("CNAnorm")

CNAnorm

A normalization method for Copy Number Aberration in cancer samples

Bioconductor version: 2.13

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

Author: Stefano Berri <sberri at illumina.com>, Henry M. Wood <H.M.Wood at leeds.ac.uk>, Arief Gusnanto <a.gusnanto at leeds.ac.uk>

Maintainer: Stefano Berri <sberri at illumina.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CNAnorm")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNAnorm")

 

PDF		CNAnorm.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Cancer, CopyNumberVariants, HighThroughputSequencing, Lung, Sequencing, Software
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-2
Depends	R (>= 2.10.1), DNAcopy, methods
Imports	methods
Suggests
System Requirements
URL	http://www.r-project.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CNAnorm_1.8.0.tar.gz
Windows Binary	CNAnorm_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	CNAnorm_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats