source("http://bioconductor.org/biocLite.R")
biocLite("BADER")

BADER

Bayesian Analysis of Differential Expression in RNA Sequencing Data

Bioconductor version: 2.13

For RNA sequencing count data, BADER fits a Bayesian hierarchical model. The algorithm returns the posterior probability of differential expression for each gene between two groups A and B. The joint posterior distribution of the variables in the model can be returned in the form of posterior samples, which can be used for further down-stream analyses such as gene set enrichment.

Author: Andreas Neudecker, Matthias Katzfuss

Maintainer: Andreas Neudecker <a.neudecker at arcor.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BADER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BADER")

 

PDF	R Script	Analysing RNA-Seq data with the "BADER" package
PDF		Reference Manual

Details

biocViews	Bioinformatics, DifferentialExpression, HighThroughputSequencing, RNAseq, SAGE, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-2
Depends
Imports
Suggests	pasilla(>= 0.2.10)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BADER_1.0.0.tar.gz
Windows Binary	BADER_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	BADER_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats