source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

AllelicImbalance

Investigates allele specific expression

Bioconductor version: 2.13

Provides a framework for allelic specific expression investigation using RNA-seq data

Author: Jesper R Gadin, Lasse Folkersen

Maintainer: Jesper R Gadin <j.r.gadin at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("AllelicImbalance")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AllelicImbalance")

 

PDF	R Script	AllelicImbalance
PDF		Reference Manual

Details

biocViews	AI, ASE, Allelic Imbalance, Genetics, HighThroughputSequencing, Infrastructure, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	GenomicRanges, R (>= 3.0.0)
Imports	methods, BiocGenerics, Biostrings, IRanges, GenomicFeatures, Rsamtools, AnnotationDbi
Suggests	RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20120608
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	AllelicImbalance_1.0.0.tar.gz
Windows Binary	AllelicImbalance_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	AllelicImbalance_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats