Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi


[Up] [Top]

Documentation for package ‘RNAinteractMAPK’ version 1.0.11

Help Pages

RNAinteractMAPK-package Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi.
cellTiterGlo Comparison of interaction experiment with an cellTiterGlo viability assay
Dmel2PPMAPK The interaction data of the main screen
dsRNAiDilutionSeries dsRNA dilution series
dsRNAiDilutionSeriesAnno dsRNA dilution series
dsRNAiDilutionSeriesDF dsRNA dilution series
ElpB1phenotype Ectopic wing vein formation phenotype caused by the EgfrElpB1.
MAPK.cv.classifier A classifier for genetic interaction data.
MAPK.cv.TPS genetic interaction surfaces
MAPK.estimate.TPS genetic interaction surfaces
MAPK.plot.classification A classifier for genetic interaction data.
MAPK.plot.heatmap.raster Plots a heatmap using grid.raster
MAPK.plot.TPS.all genetic interaction surfaces
MAPK.plot.TPS.single genetic interaction surfaces
MAPK.predict.classification A classifier for genetic interaction data.
MAPK.report.gene.lists.paper A hitlist report.
MAPK.screen.as.array genetic interaction surfaces
MAPK.smooth.scatter smooth scatter using grid raster
mRNAdoubleKDefficiency mRNA levels for double knock downs
mRNAsingleKDefficiency mRNA levels for single gene knock downs
Networks Knock interaction networks
pathwayMembership Pathway membership of genes.
PhysicalInteractions Known physical interactions
RNAinteractMAPK Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi.
singleKDphenotype Single knockdown phenotype
singleKDphenotypeAnno Single knockdown phenotype